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: 結果の評価 : 準備 : MAD法の場合

SAD法の場合

SAD 法の場合は,例えば peak の異常分散データのみ使うとすると,

------------------------------------------------------------------------
#!/bin/csh
#
setenv CCP4_OPEN UNKNOWN
setenv SOLVETMPDIR /var/tmp
setenv SYMOP /home/muser/watanabe/resolve/lib/resolve/symop.lib
#
solve <<EOD > solve-sad.log
! command file to read in raw data of formented mtz,scale analyze and solve it
title ph0054_Se BL40 MAD data for 3-wavelengths
@solve.setup
logfile solve_SAD.log

LABIN FPH1=Fpeak   SIGFPH1=SIGFpeak   DPH1=DANOpeak   
LABIN SIGDPH1=SIGDANOpeak
HKLIN ../CCP4/phoACCD_MAD_scaleit1.mtz

mad_atom Se
lambda 1

nres 990                  [approx # of residues in protein molecule]
nanomalous 12             [approx # of anomalously scattering atoms per protein]
SAD                       ! Solve the structure
EOD
------------------------------------------------------------------------

となる.



Nobuhisa Watanabe
平成16年1月7日